User contributions
- 09:04, 3 January 2024 (diff | hist) . . (+32) . . Slow wilting QTL (current)
- 09:04, 3 January 2024 (diff | hist) . . (+157) . . N File:Synteny.zip (A bundle of Python scripts and example files for: 1) Finding synteny regions of QTLs. 2) Identifying overlapping QTLs. 3) Visualizing results in SVG format.) (current)
- 07:28, 3 January 2024 (diff | hist) . . (+54) . . N Slow wilting QTL (Created page with "thumbnail")
- 07:25, 3 January 2024 (diff | hist) . . (+858) . . N File:ParentalPolymorphismSNPSelector.zip (This script is designed to process VCF files by skipping the header lines and then examining each line to check the genotypes in the 10th and 11th columns, which correspond to the maternal and paternal lines in our specific dataset. It selects SNPs whe...) (current)
- 07:19, 3 January 2024 (diff | hist) . . (+22) . . Bioinformatics (current)
- 07:02, 17 November 2023 (diff | hist) . . (+329) . . SK met (current)
- 19:05, 16 November 2023 (diff | hist) . . (0) . . N File:Example met.txt (current)
- 19:05, 16 November 2023 (diff | hist) . . (+10) . . N File:Bip example.txt (ICImapping) (current)
- 18:56, 16 November 2023 (diff | hist) . . (+19) . . N File:Vietnam KOICA.pptx (raw reset_to_snpEff) (current)
- 07:57, 22 March 2023 (diff | hist) . . (+3) . . Main Page (current)
- 07:13, 27 January 2022 (diff | hist) . . (0) . . Main Page
- 07:29, 19 February 2021 (diff | hist) . . (+66) . . Phewas (current)
- 07:24, 19 February 2021 (diff | hist) . . (+148) . . Phewas
- 07:23, 19 February 2021 (diff | hist) . . (+92) . . Phewas
- 07:21, 19 February 2021 (diff | hist) . . (+174) . . Phewas
- 07:08, 19 February 2021 (diff | hist) . . (+400) . . N Phewas (Created page with "[GWAS data collection] GRIN에서 soy50k로 찍은 GWAS data 수집 phenotype 있는 accession들만 vcf 정리 Plink 이용하여 IBD 계산후 0.98로 cut, missing이랑 het...")
- 07:04, 19 February 2021 (diff | hist) . . (+11) . . 2021 Hakyung Lab note (current)
- 04:57, 10 February 2021 (diff | hist) . . (+150) . . TIGAR (current)
- 04:54, 10 February 2021 (diff | hist) . . (+2) . . TIGAR
- 04:54, 10 February 2021 (diff | hist) . . (+257) . . TIGAR
- 06:59, 9 February 2021 (diff | hist) . . (+44) . . TIGAR
- 06:56, 9 February 2021 (diff | hist) . . (-19) . . TIGAR
- 06:53, 9 February 2021 (diff | hist) . . (+39) . . TIGAR
- 05:34, 9 February 2021 (diff | hist) . . (+81) . . TIGAR
- 02:53, 9 February 2021 (diff | hist) . . (+114) . . TIGAR
- 01:46, 9 February 2021 (diff | hist) . . (+43) . . TIGAR
- 08:22, 8 February 2021 (diff | hist) . . (+224) . . TIGAR
- 08:20, 8 February 2021 (diff | hist) . . (+658) . . TIGAR
- 08:06, 8 February 2021 (diff | hist) . . (+395) . . N TIGAR (Created page with "TIGAR는 PrediXcan 의 develop 버전? genotype 으로 expression을 impute 하는 단계 + gene based로 expression과 phenotype의 association을 계산하는 단계로 이...")
- 08:04, 8 February 2021 (diff | hist) . . (+9) . . N 2021 Hakyung Lab note (Created page with "TIGAR")
- 07:27, 14 September 2020 (diff | hist) . . (+152) . . HISAT2 pipeline (→sort/markdup) (current)
- 06:54, 14 September 2020 (diff | hist) . . (-12) . . HISAT2 pipeline (→sort/markdup)
- 06:54, 14 September 2020 (diff | hist) . . (+59) . . HISAT2 pipeline (→sort/markdup)
- 06:06, 14 September 2020 (diff | hist) . . (+18) . . HISAT2 pipeline
- 06:05, 14 September 2020 (diff | hist) . . (+237) . . N HISAT2 pipeline (Created page with "==mapping == /data1/program/hisat2/hisat2-2.2.1/hisat2 -q --phred33 -x /data1/ref/Gmax_275_v2.0.fa.hisat --summary-file SS2-2_1_hisat_summary -p 6 -1 {forward_input.fq.gz} -2...")
- 06:01, 14 September 2020 (diff | hist) . . (+20) . . 2020 Hakyung Lab note (current)
- 01:19, 4 June 2020 (diff | hist) . . (+22) . . QTL (current)
- 01:19, 4 June 2020 (diff | hist) . . (+65) . . N QTL (Created page with "=Where Synteny bloack data is= 244:/alima9002/synteny/Gm275_self#")
- 01:18, 4 June 2020 (diff | hist) . . (+7) . . N 2020 Hakyung Lab note (Created page with "QTL")
- 05:55, 7 February 2020 (diff | hist) . . (+502) . . 2018 Hakyung R command (current)
- 04:30, 11 July 2019 (diff | hist) . . (+133) . . TS GBS (current)
- 04:29, 11 July 2019 (diff | hist) . . (-192) . . TS GBS
- 02:24, 11 July 2019 (diff | hist) . . (-9) . . TS GBS
- 02:23, 11 July 2019 (diff | hist) . . (+6) . . TS GBS (→바코드에 따라 read 분류하기)
- 02:23, 11 July 2019 (diff | hist) . . (+10) . . TS GBS (→processing)
- 02:21, 11 July 2019 (diff | hist) . . (-10) . . TS GBS (→processing)
- 02:21, 11 July 2019 (diff | hist) . . (+4) . . TS GBS (→바코드 분류하기)
- 02:19, 11 July 2019 (diff | hist) . . (+1) . . TS GBS (→바코드 분류하기)
- 02:19, 11 July 2019 (diff | hist) . . (+2) . . TS GBS (→바코드 분류하기)
- 02:19, 11 July 2019 (diff | hist) . . (+2) . . TS GBS (→Where data came from)
- 02:18, 11 July 2019 (diff | hist) . . (-3) . . TS GBS (→Where data came from)
- 02:18, 11 July 2019 (diff | hist) . . (-5) . . TS GBS (→processing)
- 02:17, 11 July 2019 (diff | hist) . . (+6) . . TS GBS (→processing)
- 02:16, 11 July 2019 (diff | hist) . . (+857) . . TS GBS (→processing)
- 02:09, 11 July 2019 (diff | hist) . . (+2) . . TS GBS (→processing)
- 02:06, 11 July 2019 (diff | hist) . . (-4) . . TS GBS (→processing)
- 02:06, 11 July 2019 (diff | hist) . . (-2) . . TS GBS (→processing)
- 02:05, 11 July 2019 (diff | hist) . . (+2) . . TS GBS (→processing)
- 02:05, 11 July 2019 (diff | hist) . . (+5) . . TS GBS
- 02:01, 11 July 2019 (diff | hist) . . (+151) . . TS GBS
- 07:10, 3 June 2019 (diff | hist) . . (+8) . . SK met (→snp in puredmr snpeff)
- 06:05, 3 June 2019 (diff | hist) . . (+1) . . TS GBS (→Where data came from)
- 06:05, 3 June 2019 (diff | hist) . . (+126) . . N TS GBS (Created page with "==Where data came from== 193 : /NGS/NGS/GlycineMax/DNA/SCJeong/Taekwang_1.fastq 193 : /NGS/NGS/GlycineMax/DNA/SS2-2_1.fastq.gz")
- 06:04, 3 June 2019 (diff | hist) . . (+11) . . 2019 Hakyung Lab note (current)
- 06:03, 3 June 2019 (diff | hist) . . (-11) . . 2019 Hakyung Lab note
- 08:38, 29 May 2019 (diff | hist) . . (+18) . . SK met (→snp in puredmr snpeff)
- 08:38, 29 May 2019 (diff | hist) . . (+200) . . SK met
- 04:11, 10 April 2019 (diff | hist) . . (-192) . . SK met
- 12:53, 9 April 2019 (diff | hist) . . (+134) . . SK met
- 08:12, 9 April 2019 (diff | hist) . . (+272) . . SK met
- 06:34, 9 April 2019 (diff | hist) . . (+2) . . SK met
- 06:33, 9 April 2019 (diff | hist) . . (+435) . . SK met
- 05:06, 9 April 2019 (diff | hist) . . (+138) . . SK met
- 04:42, 9 April 2019 (diff | hist) . . (-5) . . SK met
- 04:42, 9 April 2019 (diff | hist) . . (+5) . . SK met
- 04:42, 9 April 2019 (diff | hist) . . (-3) . . SK met
- 04:41, 9 April 2019 (diff | hist) . . (-8) . . SK met
- 04:38, 9 April 2019 (diff | hist) . . (+4) . . N Aprill (Created page with "dddd") (current)
- 04:38, 9 April 2019 (diff | hist) . . (+11) . . 2019 Hakyung Lab note
- 08:03, 8 April 2019 (diff | hist) . . (+494) . . SK met (→0408 with filller)
- 07:08, 8 April 2019 (diff | hist) . . (+180) . . SK met
- 07:05, 8 April 2019 (diff | hist) . . (+161) . . SK met
- 13:43, 7 April 2019 (diff | hist) . . (+75) . . SK met (→process)
- 07:30, 25 March 2019 (diff | hist) . . (+508) . . SK met (→process)
- 04:49, 25 March 2019 (diff | hist) . . (+137) . . SK met (→process)
- 05:34, 14 March 2019 (diff | hist) . . (+1) . . SK met (→process)
- 05:14, 14 March 2019 (diff | hist) . . (+556) . . SK met (→process)
- 05:10, 14 March 2019 (diff | hist) . . (+202) . . SK met (→process)
- 07:52, 28 February 2019 (diff | hist) . . (+48) . . SK met (→process)
- 06:53, 28 February 2019 (diff | hist) . . (+350) . . SK met (→process)
- 05:36, 26 February 2019 (diff | hist) . . (+25) . . SK met (→process)
- 01:37, 11 February 2019 (diff | hist) . . (-434) . . SK met (→process)
- 01:36, 11 February 2019 (diff | hist) . . (0) . . SK met (→process)
- 01:34, 11 February 2019 (diff | hist) . . (+17) . . SK met (→process)
- 01:30, 11 February 2019 (diff | hist) . . (+155) . . SK met (→process)
- 01:24, 29 January 2019 (diff | hist) . . (+2) . . SK met (→process)
- 04:52, 28 January 2019 (diff | hist) . . (+3) . . SK met (→process)
- 04:11, 28 January 2019 (diff | hist) . . (-153) . . SK met (→process)
- 04:10, 28 January 2019 (diff | hist) . . (+130) . . SK met (→process)
- 04:06, 28 January 2019 (diff | hist) . . (-89) . . SK met (→process)
- 04:05, 28 January 2019 (diff | hist) . . (+110) . . SK met (→process)
- 03:39, 28 January 2019 (diff | hist) . . (+107) . . SK met (→process)
- 02:02, 28 January 2019 (diff | hist) . . (+457) . . SK met (→process)
- 01:34, 28 January 2019 (diff | hist) . . (+4) . . SK met (→process)
- 01:33, 28 January 2019 (diff | hist) . . (+110) . . SK met (→process)
- 00:53, 28 January 2019 (diff | hist) . . (-78) . . SK met (→materials)
- 00:53, 28 January 2019 (diff | hist) . . (+79) . . SK met (→materials)
- 02:10, 25 January 2019 (diff | hist) . . (-35) . . SK met (→process)
- 02:09, 25 January 2019 (diff | hist) . . (+283) . . SK met (→process)
- 05:54, 23 January 2019 (diff | hist) . . (-1) . . SK met (→materials)
- 05:51, 23 January 2019 (diff | hist) . . (+1) . . SK met (→materials)
- 05:50, 23 January 2019 (diff | hist) . . (-9) . . 2019 Hakyung Lab note
- 05:50, 23 January 2019 (diff | hist) . . (-101) . . July (Blanked the page) (current)
- 05:49, 23 January 2019 (diff | hist) . . (+101) . . N July (Created page with "==큰글씨== ===하위목록 === #번호 ## 이건 작은거 #매기기 박스 안에 넣어라")
- 05:48, 23 January 2019 (diff | hist) . . (+9) . . 2019 Hakyung Lab note
- 05:45, 23 January 2019 (diff | hist) . . (+12) . . SK met
- 05:44, 23 January 2019 (diff | hist) . . (+13) . . SK met
- 05:29, 23 January 2019 (diff | hist) . . (+4) . . SK met
- 05:28, 23 January 2019 (diff | hist) . . (+2) . . SK met
- 05:26, 23 January 2019 (diff | hist) . . (+834) . . N SK met (Created page with "raw_data : /NGS/NGS/VignaRadiata/DNA/SK/ TBI[7]=TN1509D0657--TCCGGAGA-AGGCTATA sample[7]=SK010 TBI[57]=TN1509D0710--TAATGCGC-TAAGATTA sample[57]=SK068 TBI[177]=TN1510D0932--...")
- 05:21, 23 January 2019 (diff | hist) . . (+10) . . N 2019 Hakyung Lab note (Created page with "SK_met")
- 04:26, 8 January 2019 (diff | hist) . . (+1,208) . . N Hakyung January Lab note (Created page with "import sys print ('<?xml version="1.0" encoding="UTF-8"?> <!DOCTYPE svg PUBLIC "-//W3C//DTD SVG 1.1//EN" "http://www.w3.org/Graphics/SVG/1.1/DTD/svg11.dtd"> <svg xmlns="http:/...") (current)
- 04:45, 12 October 2018 (diff | hist) . . (+28) . . 2018 Hakyung Lab note
- 04:44, 12 October 2018 (diff | hist) . . (+639) . . N 2018 Hakyung R command (Created page with "library(ggplot2) ggplot(summary, aes(x=summary$no, y = summary$m)) + geom_point() + geom_errorbar(aes(ymin=summary$m-summary$se, ymax=summarWarning message: width=.1) > pdf("...")
- 02:21, 30 August 2018 (diff | hist) . . (+25) . . 2018 Hakyung Lab note
- 02:20, 30 August 2018 (diff | hist) . . (-1) . . 2018 Hakyung August Lab note (→결과로 나오는 code) (current)
- 02:20, 30 August 2018 (diff | hist) . . (+678) . . 2018 Hakyung August Lab note (→svg 만드는 코드)
- 02:15, 30 August 2018 (diff | hist) . . (-1) . . 2018 Hakyung August Lab note (→svg 만드는 코드)
- 02:14, 30 August 2018 (diff | hist) . . (+8) . . 2018 Hakyung August Lab note (→svg 만드는 코드)
- 02:14, 30 August 2018 (diff | hist) . . (+954) . . 2018 Hakyung August Lab note (→svg 만드는 코드)
- 01:54, 30 August 2018 (diff | hist) . . (+35) . . 2018 Hakyung Lab note
- 08:39, 27 August 2018 (diff | hist) . . (+8) . . 2018 Hakyung August Lab note (→svg 만드는 코드)
- 08:39, 27 August 2018 (diff | hist) . . (+447) . . N 2018 Hakyung August Lab note (Created page with "== svg 만드는 코드== * format을 써봤음 ㅎㅎ print ("<svg width = ""100000"" height = ""50000""/>") x = 10 rx = 100 ry = 0 f = open ("chromosomesize.txt", "r").rea...")
- 02:02, 24 July 2018 (diff | hist) . . (+104) . . 2018 Hakyung July Lab note (current)
- 02:00, 24 July 2018 (diff | hist) . . (+1) . . 2018 Hakyung July Lab note (→리스트 비교하기(차집합,교집합))
- 02:00, 24 July 2018 (diff | hist) . . (+824) . . 2018 Hakyung July Lab note (→리스트 비교하기(차집합,교집합) =)
- 01:58, 24 July 2018 (diff | hist) . . (+52) . . 2018 Hakyung July Lab note
- 01:56, 24 July 2018 (diff | hist) . . (-1) . . 2018 Hakyung July Lab note (→원하는 리스트 뽑기)
- 01:56, 24 July 2018 (diff | hist) . . (+1,722) . . 2018 Hakyung July Lab note (→원하는 리스트 뽑기)
- 01:50, 24 July 2018 (diff | hist) . . (+33) . . 2018 Hakyung July Lab note (→HT-seq, edgeR 처리 후 한 파일에 리스트 형태로 저장)
- 01:48, 24 July 2018 (diff | hist) . . (+4) . . 2018 Hakyung July Lab note (→HT-seq, edgeR 처리 후 한 파일에 리스트 형태로 저장)
- 01:48, 24 July 2018 (diff | hist) . . (+628) . . 2018 Hakyung July Lab note (→HT-seq, edgeR 처리 후 한 파일에 리스트 형태로 저장)
- 01:42, 24 July 2018 (diff | hist) . . (-10) . . 2018 Hakyung July Lab note (→HT-seq, edgeR 처리 후 한 파일에 리스트 형태로 저장)
- 01:40, 24 July 2018 (diff | hist) . . (+1,297) . . 2018 Hakyung July Lab note
- 01:36, 24 July 2018 (diff | hist) . . (+1,636) . . N 2018 Hakyung July Lab note (Created page with "== file = open ("/data2/haggui/RNA/edgeR/raw_edgeR/control.counts.edgeR","r") lines = file.readlines() list = [] for line in lines : gene_name = line.split('"')[1] #"...")
- 01:30, 24 July 2018 (diff | hist) . . (+31) . . 2018 Hakyung Lab note
- 07:20, 19 July 2018 (diff | hist) . . (+203) . . 2108 Hakyung TUXEDO (→edgeR) (current)
- 07:18, 19 July 2018 (diff | hist) . . (-3) . . 2108 Hakyung TUXEDO (→edgeR)
- 07:18, 19 July 2018 (diff | hist) . . (+87) . . 2108 Hakyung TUXEDO (→edgeR)
- 07:17, 19 July 2018 (diff | hist) . . (+9) . . 2108 Hakyung TUXEDO (→edgeR)
- 07:17, 19 July 2018 (diff | hist) . . (-20) . . 2108 Hakyung TUXEDO (→edgeR)
- 07:16, 19 July 2018 (diff | hist) . . (+706) . . 2108 Hakyung TUXEDO
- 07:12, 19 July 2018 (diff | hist) . . (+104) . . 2108 Hakyung TUXEDO (→HTseq-count)
- 07:11, 19 July 2018 (diff | hist) . . (+373) . . 2108 Hakyung TUXEDO
- 07:08, 19 July 2018 (diff | hist) . . (+386) . . 2108 Hakyung TUXEDO
- 04:20, 19 July 2018 (diff | hist) . . (0) . . 2108 Hakyung TUXEDO
- 04:19, 19 July 2018 (diff | hist) . . (+247) . . 2108 Hakyung TUXEDO
- 08:33, 10 July 2018 (diff | hist) . . (+478) . . 2108 Hakyung TUXEDO
- 08:26, 10 July 2018 (diff | hist) . . (+1) . . 2108 Hakyung TUXEDO (→Index Building)
- 08:26, 10 July 2018 (diff | hist) . . (+2) . . 2108 Hakyung TUXEDO (→Index Building)
- 08:26, 10 July 2018 (diff | hist) . . (-2) . . 2108 Hakyung TUXEDO (→Index Building)
- 08:25, 10 July 2018 (diff | hist) . . (-25) . . 2108 Hakyung TUXEDO (→Index Building)
- 08:24, 10 July 2018 (diff | hist) . . (+818) . . N 2108 Hakyung TUXEDO (Created page with "==Index Building== tophat2는 fasta file을 그대로 사용하기 보다는 **index를 만들어 파일 사용을 용이하게 한다.** 이를 위해 첫 턱시도 파이프...")
- 04:36, 28 June 2018 (diff | hist) . . (+82) . . 2018 Hakyung June Lab note (current)
- 08:13, 27 June 2018 (diff | hist) . . (+196) . . 2018 Hakyung June Lab note
- 06:06, 27 June 2018 (diff | hist) . . (+108) . . 2018 Hakyung June Lab note
- 05:39, 27 June 2018 (diff | hist) . . (+6) . . 2018 Hakyung June Lab note (→list 활용하기)
- 05:39, 27 June 2018 (diff | hist) . . (+3) . . 2018 Hakyung June Lab note (→shell command)
- 05:39, 27 June 2018 (diff | hist) . . (+5) . . 2018 Hakyung June Lab note (→새 창에서 작업 (컴퓨터 전원 끄더라도 지속))
- 05:38, 27 June 2018 (diff | hist) . . (0) . . 2018 Hakyung June Lab note (→XXX' 폴더 만들기)
- 05:38, 27 June 2018 (diff | hist) . . (+1) . . 2018 Hakyung June Lab note (→내 폴더 찾아가기)
- 05:38, 27 June 2018 (diff | hist) . . (+2) . . 2018 Hakyung June Lab note (→logout 후 새로 들어가기)
- 05:37, 27 June 2018 (diff | hist) . . (0) . . 2018 Hakyung June Lab note (→list 활용하기)
- 05:37, 27 June 2018 (diff | hist) . . (+1,625) . . 2018 Hakyung June Lab note
- 05:28, 27 June 2018 (diff | hist) . . (+2) . . 2018 Hakyung June Lab note
- 04:55, 22 June 2018 (diff | hist) . . (+290) . . N 2018 Hakyung June Lab note (Created page with "# logout 후 새로 들어가기 exit ssh khg940711@147.46.250.193 비밀번호 입력 #내 폴더 찾아가기 cd /data2/haggui #'XXX' 폴더 만들기 mkdir XXX #RNA 폴...")
- 04:47, 22 June 2018 (diff | hist) . . (+1) . . 2018 Hakyung Lab note
- 04:46, 22 June 2018 (diff | hist) . . (+29) . . N 2018 Hakyung Lab note (Created page with "2018 Hakyung Jun Lab note")